Recently published: "Molecular characteristics of early-stage female germ cells revealed by RNA sequencing of low-input cells and analysis of genome-wide DNA methylation". DNA Research (2019, April). READ MORE >
Recently published: "Proteome-wide analysis of USP14 substrates revealed its role in hepatosteatosis via stabilization of FASN". Nature Communications (2018, Nov). READ MORE >
Recently published: "Quality control of single amino acid variations detected by tandem mass spectrometry". Journal of Proteomics (2018, Sep). READ MORE >
Recently published: "NIPS, a 3D network-integrated predictor of deleterious protein SAPs, and its application in cancer prognosis". Scientific Reports (2018, May). READ MORE >
Recently published: "Metagenomic Taxonomy-Guided Database-Searching Strategy for Improving Metaproteomic Analysis". Journal of Proteome Research. (2018, April). READ MORE >
Recently published: "Network Module-Based Model in the Differential Expression Analysis for RNA-seq". Bioinformatics. (2017, April). READ MORE >
Recently published: "CanProVar 2.0: An Updated Database of Human Cancer Proteome Variation". Journal of Proteome Research. (2017, Feb). READ MORE >
We develops and applies computational methods of mass spectrometry (MS)-based proteomics for formulating the processes of complex phenotype/diseases by integrating genome/transcriptome data and biological network. Our ambitious is to prioritize key proteins or protein variations/modifications in disease, as well as identify clinical biomarker, predict functional sub-network/pathways, interpret mechanisms underneath specific molecular processes or states by means of developing statistic models and bioinformatic approaches.
--- 2019 --------
[April] Jing Li (Junior)'s paper was published at DNA Research, which's a collabrating work with Dr.Binbin Ma and Prof.Ji Wu.
[Jan] Jing Li was awarded Chenxing Distinguished Young Scholarship of Shanghai Jiao Tong University ( Class A).
[Jan] Jie Ren's paper was published at BioMed Research International.
[Jan] Four senior students joined the group for their graduation projects. Yiming Ma and Kai Kang are from the department of Bionformatics& Biostatistifcs of Shanghai Jiao Tong University. Liyuan Zhao is a rising senior from Tongji University persuing a degreen in Bioinformatics. Yimin Zhang is a rising senior in biology at Fudan University. Welcome our new members!
--- 2018 ----------------
[Dec] Jie Ren's paper was published at BMC Systems Biology, Congs~.
[Sep] Welcome new graduate students Qilian Fan and Xiaoyun Yang!
[Sep] Bo Wang's paper was published at Journal of Proteomics, which's a collabrating work with Dr. Xinpei Yi and Prof.Yan Fu.
[April] Bo Wang was awarded SJTU excellent graduate in 2018 （上海交通大学优秀毕业生）.
[April] Jingqiu won Award of Excellent Graduate, Shanghai in 2018 (上海市优秀毕业生).
[March] Bo Wang's NIPS (protein mutation ranking) paper was accepted by Scientific Reports, Congs!.
[Feb] Jingqiu's Metaproteome paper was accepted by Journal of Proteome Research, Congs!.
[Sep] Welcome new graduate students Yongxin, Yihao, Liangquan and Christopher join us!
[Sep] Mingli's article is published in Bioinformatics, Congs!.
Biostatistics& Bioinformatics Workshop 2017
[April] Welcome new PhD student Yafei Chang to our lab.
[April] Mingli's statistical model paper is accepted to Bioinformatics.
[March] Xiaojing's allergen prediction paper is online at Interdisciplinary Sciences: Computational Life Sciences
[Feb] Menghuan's CanProVar 2.0 paper is published at Journal of Proteome Research.
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Shanghai, China, 200240