Recently published: "Integrative Proteomic Characterization of Human Lung Adenocarcinoma". Cell (2020, July). READ MORE >
Recently published: "Alternative splicing signatures in preimplantation embryo development". Cell& Bioscience (2020, March). READ MORE >
Recently published: "Molecular characteristics of early-stage female germ cells revealed by RNA sequencing of low-input cells and analysis of genome-wide DNA methylation". DNA Research (2019, April). READ MORE >
Recently published: "Proteome-wide analysis of USP14 substrates revealed its role in hepatosteatosis via stabilization of FASN". Nature Communications (2018, Nov). READ MORE >
Recently published: "Quality control of single amino acid variations detected by tandem mass spectrometry". Journal of Proteomics (2018, Sep). READ MORE >
Recently published: "NIPS, a 3D network-integrated predictor of deleterious protein SAPs, and its application in cancer prognosis". Scientific Reports (2018, May). READ MORE >
Recently published: "Metagenomic Taxonomy-Guided Database-Searching Strategy for Improving Metaproteomic Analysis". Journal of Proteome Research. (2018, April). READ MORE >
We develop and apply computational methods of mass spectrometry (MS)-based proteomics for formulating the processes of complex phenotype/diseases by integrating genome/transcriptome data and biological network. Our ambitious is to prioritize key proteins or protein variations/modifications in disease, as well as identify clinical biomarker, predict functional sub-network/pathways, interpret mechanisms underneath specific molecular processes or states by means of developing statistic models and bioinformatic approaches.
--- 2021 --------
[Feb] Yafei Chang's meta-proteomics paper was accepted by Briefings in Bioinformatics. Congs~.
[Jan] Prof. Jing Li was selected as a “Rising Stars in Proteomics and Metabolomics” by Journal of Proteome Research.
--- 2020 --------
[Dec] Xi Cheng's drug repurposing paper was accepted by Cancer Biology& Medicine , which's a collabrating work with Prof.Minjia Tan, Shanghai Institute of Materia Medica. Chinese Academy of Sciences.
[Sept] Christopher Reyes (Chris) began his new journey as a PhD student in our group. Congs!
[Sept] Miss.Qun Dong joined the group as a PhD student. Qun received her master degree in Bioinformatics from Harbin Medical University. Welcome, Qun!
[Sept] Mr.Syrous Irani (Cheng-de Liu) joined the group as a master student. Cheng-de received his B.S. degree in Pharmacy from Shanghai Jiao Tong University. Welcome, Cheng-de!
[Sept] Mr.Xinyi Mou joined the group as a master student. Xinyi received his B.S. degree in Bioinformatics from University of Electronic Science and Technology of China. Welcome, Xinyi!
[Sept] Miss.Siqi Luo joined the group as a master student. She received his B.S. degree in Life Science from Xiamen University. Welcome, Siqi!
[July] Our LUAD proteome paper was published at Cell, which's a collabrating work with multiple groups in CNHPP.
[March] Geng Tian (Garen)'s paper was published at Cell & Bioscience, which's a collabrating work with Prof.Ji Wu.
--- 2019 --------
[Sept] Miss.Liyuan Zhao joined the group as a master student. Liyuan received her B.S. degree in Bioinformatics from Tongji University. Welcome, Liyuan!
[Sept] Mr.Guanghua Qiao joined the group as a master student. Quanghua received his B.S. degree in Statistics from Shanghai University of International Business and Economics. Welcome, Guanghua!
[Sept] Mr.Yiming Ma joined the group as a PhD student. Yiming received his B.S. degree in Bioinformatics from Shanghai Jiao Tong University. Welcome, Yiming!
[July] Miss. Yimin Zhang joined the group as a Research Intern. Yimin received her B.S. degree in Biological Science from Fudan University. Welcome, Yimin!
[July] Yafei Chang's paper was accepted by Genomics, Proteomics & Bioinformatics, which's a collabrating work with Prof.Zhiheng Xu, Institute of Genetics and Developmental Biology Chinese Academy of Sciences.
[April] Jing Li (Junior)'s paper was published at DNA Research, which's a collabrating work with Dr.Binbin Ma and Prof.Ji Wu.
[Jan] Jing Li was awarded Chenxing Distinguished Young Scholarship of Shanghai Jiao Tong University ( Class A).
[Jan] Jie Ren's paper was published at BioMed Research International.
800 Dongchuan Road, Minhang
Shanghai, China, 200240