Publications
(* corresponding author)
2015
- Zhang, Y., He, Y., Zheng, G., Wei, C.*, "MOST+: A de novo motif finder combining genomic sequence and heterogeneous genome-wide signatures", BMC Genomics , Accepted
2014
- Xiao, G. et al., "Whole genome sequencing of six dog breeds from continuous altitudes reveals adaption to high-altitude hypoxia", Genome Research, 2014.4.10,published online in advance
- Hou, T., Zheng, G., Zhang P., Jia, J., Li, J., Xie, L., Wei, C.*, Li, Y., "LAceP: lysine acetylation sites prediction using logistic regression classifier", 2014, PLoS ONE, 9(2):e89575
2013
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Xu, H., Yu, H., Tu, K., Shi, Q., Wei, C., Li, Y., Li, Y., "cGRNB: a web server for building combinatorial gene regulatory networks through integrated engineering of seed-matching sequence information and gene expression datasets", 2013, BMC Systems Biology , 7(Suppl 2):S7
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Jia, B., Xuan, L., Cai, K., Hu, Z., Ma, L., Wei, C.*, "NeSSM: a Next-generation Sequencing Simulator for Metagenomics", 2013, PLoS ONE , 8(10):e75448.
2012
- Cui, X., Wang, Q., Yin, W., Xu, H., Wilson, Z., Pan, S., Wei, C. and Zhang, D., "PMRD: a curated database for genes and mutants involved in plant male reproduction", 2012, BMC Plant Biology , 12:215
- He, Y., Zhang, Y., Zheng, G., Wei, C.*, "CTF: A CRF-based Transcription Factor Binding Sites Finding System", 2012, BMC Genomics , 13(Suppl 8):S18
- Zheng, G., Liu, Q., Ding, G., Wei, C. * , Li, Y., "Towards Biological Characters of Interactions between Transcription Factors and their DNA Targets in Mammals", 2012, BMC Genomics ,13:388
2011
- Zheng, G., Wang, H., Wei, C.*, Li, Y., "iGepros: An integrated gene and protein annotation server for biological nature exploration", BMC Bioinformatics, 2011, 12(Suppl 14): S6
- Jia, P., Liu, L., Wei, C.*, "MetaBinG: Using GPUs to accelerate metagenomic sequence classification", PLoS ONE, 2011, 6(11):e25353
2010
- Ling, Z., Kong, J., Jia, P., Wei, C., Wang, Y., Pan, Z., Huang, W., Chen, H., Xiang, C., "Analsysis of oral microbiota in children with dental caries by PCR-DGGE and Barcoded Pyrosequencing", 2010, Microbial Ecology, 60(3):677-90
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Zhang, C., Zhang, M., Wang, S., Han R., Cao, Y., Hua, W., Mao, Y., Zhang X., Pang X., Wei, C., Zhao, G., Chen, Y., Zhao, L., "Interactions between gut microbiota, host genetics, and diet relevant to development of metabolic syndromes in mice", ISME J, 2010, 4(2)232-241
2009
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The MGC Project Team, "The Completion of the Mammalian Gene Collection (MGC)", Genome Research, 2009, 19:2324-2333
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Yang, X., Xie, L., Li, Y., Wei, C*. "More than 9,000,000 Unique Genes in Human Gut Bacterial Community: Estimating Gene Numbers Inside a Human Body", PLoS ONE, 2009, 4(6): e6074.
2008
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Zheng, G., Qian, Z., Yang, Q., Wei, C., Xie, L., Zhu, Y. and Li, Y., "The Combination Approach of SVM and ECOC for Powerful Identification and Classification of Transcription Factor", BMC Bioinformatics, 2008 Jun 16;9(1):282.
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Zheng, G., Tu, K., Yang, Q., Xiong, Y., Wei, C., Xie, L., Zhu, Y. and Li, Y., "ITFP: an integrated platform of mammalian transcription factors", Bioinformatics, 2008, 24(20):2416-2417
2006
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Arumugam, M., Wei, C., Brown, R. H. and Brent, M. R., "PAIRAGON + N-SCAN_EST: A Model-Based Gene Annotation Pipeline", Genome Biology, 2006, 7(Suppl I):S5.
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Wei, C. and Brent, M. R., "Using ESTs to Improve the Accuracy of de novo Gene Prediction", BMC Bioinformatics, 2006, 7:327.
2005
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Wei, C., Lamesch, P., Arumugam M., Rosenberg, J., Hu, P., Vidal, M., and Brent, M. R., "Closing in on the C.elegans ORFeome by Cloning TWINSCAN predictions", Genome Research , 2005, 15:577-582.
Reported by Nature Reviews Genetics as Research Highlight .
2003
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Stein, L. D., Z. Bao, ..., Wei, C., ..., Waterston, R. H., "The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics", PLoS Biology , 2003, 1(2): E45.
©2011
Chaochun Wei